PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00001.1.g09170.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family SBP
Protein Properties Length: 98aa    MW: 10665.9 Da    PI: 10.7836
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00001.1.g09170.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP43.21e-1342704977
                                  EEETTT--SS--S-STTTT-------S-- CS
                           SBP 49 fhelsefDeekrsCrrrLakhnerrrkkq 77
                                  fhelsefD+ krsCrrrL +hnerrrk +
  Zjn_sc00001.1.g09170.1.am.mk 42 FHELSEFDDIKRSCRRRLTGHNERRRKYA 70
                                  **************************976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5114111.092169IPR004333Transcription factor, SBP-box
SuperFamilySSF1036125.69E-114072IPR004333Transcription factor, SBP-box
PfamPF031101.7E-84268IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 98 aa     Download sequence    Send to blast
MSTGGGGPWD SLAFAVAAFA RTRMCASHAP DSGSKKRPFP LFHELSEFDD IKRSCRRRLT  60
GHNERRRKYA ADQQVGGGDG GSDHQGGRFP GNPPPLIR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16368ERRRKY
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003560169.31e-15PREDICTED: squamosa promoter-binding-like protein 13
SwissprotQ6Z4612e-15SPL13_ORYSJ; Squamosa promoter-binding-like protein 13
TrEMBLI1GU512e-15I1GU51_BRADI; Uncharacterized protein
STRINGBRADI1G26720.15e-15(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP3250634
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15270.12e-12squamosa promoter binding protein-like 5